GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Oglumipatula_OGLUM08G08080 [ OGLUM08G08080]	8	7570831	7572396	v1.5	Oryza glumipatula (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Oglumipatula_OGLUM08G08080.2 OGLUM08G08080.2	High	No	536	OG0252015		Get ORF Coding potential... Type: noncoding Potential: -0.626 Folding energies... MFEI: -25.896 AMFE: -0.640 GC content %: 40.485
Oglumipatula_OGLUM08G08080.3 OGLUM08G08080.3	High	No	275	OG0252016		Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -28.727 AMFE: -0.556 GC content %: 51.636

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).