GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Oglumipatula_OGLUM10G07470 [ OGLUM10G07470]	10	10895920	10899083	v1.5	Oryza glumipatula (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Oglumipatula_OGLUM10G07470.1 OGLUM10G07470.1	High	No	484	OG0053940		Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -29.008 AMFE: -0.486 GC content %: 59.711
Oglumipatula_OGLUM10G07470.2 OGLUM10G07470.2	High	No	451	OG0053940		Get ORF Coding potential... Type: noncoding Potential: -0.853 Folding energies... MFEI: -27.871 AMFE: -0.469 GC content %: 59.424

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).