GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Oglumipatula_OGLUM11G13270 [ OGLUM11G13270]	11	16365221	16372622	v1.5	Oryza glumipatula (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Oglumipatula_OGLUM11G13270.1 OGLUM11G13270.1	High	No	1043	OG0004356		Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -28.629 AMFE: -0.670 GC content %: 42.761
Oglumipatula_OGLUM11G13270.2 OGLUM11G13270.2	High	No	967	OG0004356		Get ORF Coding potential... Type: noncoding Potential: -0.782 Folding energies... MFEI: -28.769 AMFE: -0.664 GC content %: 43.330
Oglumipatula_OGLUM11G13270.3 OGLUM11G13270.3	High	No	1175	OG0004356		Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -28.017 AMFE: -0.670 GC content %: 41.787

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).