Olongistaminata AMDW01001089.1 FG001

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Olongistaminata_AMDW01001089.1_FG001
[ AMDW01001089.1_FG001]
AMDW01001089.1 405 608 v1 Oryza longistaminata (Ensembl Plants 51)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Olongistaminata_AMDW01001089.1_FGT001
AMDW01001089.1_FGT001
High No 204 OG0253092
Coding potential...
Type: noncoding Potential: -0.669
Folding energies...
MFEI: -39.902 AMFE: -0.662
GC content
%: 60.294


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Olongistaminata_AMDW01001089.1_FG001.png