GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Omeridionalis_OMERI01G00560 [ OMERI01G00560]	1	401179	405073	v1.3	Oryza meridionalis (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Omeridionalis_OMERI01G00560.1 OMERI01G00560.1	High	No	1182	OG0054105		Get ORF Coding potential... Type: noncoding Potential: -0.722 Folding energies... MFEI: -26.032 AMFE: -0.619 GC content %: 42.047
Omeridionalis_OMERI01G00560.2 OMERI01G00560.2	High	No	1093	OG0054105		Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -25.618 AMFE: -0.606 GC content %: 42.269

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).