GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Omeridionalis_OMERI01G04210 [ OMERI01G04210]	1	3212333	3216320	v1.3	Oryza meridionalis (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Omeridionalis_OMERI01G04210.1 OMERI01G04210.1	High	No	2152	OG0054106		Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -28.290 AMFE: -0.649 GC content %: 43.587
Omeridionalis_OMERI01G04210.2 OMERI01G04210.2	High	No	2086	OG0054106		Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -28.447 AMFE: -0.653 GC content %: 43.576

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).