Omeridionalis OMERI01G08950
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Omeridionalis_OMERI01G08950 [ OMERI01G08950] |
1 | 8066505 | 8070761 | v1.3 | Oryza meridionalis (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Omeridionalis_OMERI01G08950.1 OMERI01G08950.1 |
High | No | 627 | OG0006349 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -29.553 AMFE: -0.490 GC content %: 60.287 | |
| Omeridionalis_OMERI01G08950.2 OMERI01G08950.2 |
High | No | 525 | OG0006349 | Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -27.429 AMFE: -0.450 GC content %: 60.952 | |
| Omeridionalis_OMERI01G08950.3 OMERI01G08950.3 |
Low | No | 1920 | OG0006349 | Get ORF Coding potential... Type: noncoding Potential: -0.441 Folding energies... MFEI: -21.568 AMFE: -0.565 GC content %: 38.177 | |
| Omeridionalis_OMERI01G08950.4 OMERI01G08950.4 |
Low | No | 1557 | OG0006349 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -19.660 AMFE: -0.550 GC content %: 35.774 | |
| Omeridionalis_OMERI01G08950.5 OMERI01G08950.5 |
Low | No | 1455 | OG0006349 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -18.096 AMFE: -0.528 GC content %: 34.296 | |
| Omeridionalis_OMERI01G08950.6 OMERI01G08950.6 |
Low | No | 906 | OG0006349 | Get ORF Coding potential... Type: noncoding Potential: -0.438 Folding energies... MFEI: -28.554 AMFE: -0.511 GC content %: 55.850 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Omeridionalis_OMERI01G08950.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Omeridionalis_OMERI01G08950.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Omeridionalis_OMERI01G08950.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Omeridionalis_OMERI01G08950.3 | SwissProt | 2021-04-01 | Q8RXF8 | 8.08e-11 |
| Omeridionalis_OMERI01G08950.6 | SwissProt | 2021-04-01 | Q8RXF8 | 2.11e-11 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
