GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Omeridionalis_OMERI01G22150 [ OMERI01G22150]	1	23361649	23369330	v1.3	Oryza meridionalis (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Omeridionalis_OMERI01G22150.1 OMERI01G22150.1	High	No	234	OG0255911		Get ORF Coding potential... Type: noncoding Potential: -0.371 Folding energies... MFEI: -23.248 AMFE: -0.573 GC content %: 40.598
Omeridionalis_OMERI01G22150.2 OMERI01G22150.2	High	No	267	OG0255912		Get ORF Coding potential... Type: noncoding Potential: -0.337 Folding energies... MFEI: -21.948 AMFE: -0.563 GC content %: 38.951
Omeridionalis_OMERI01G22150.3 OMERI01G22150.3	High	No	213	OG0255913		Get ORF Coding potential... Type: noncoding Potential: -0.367 Folding energies... MFEI: -20.516 AMFE: -0.514 GC content %: 39.906

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).