GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Omeridionalis_OMERI02G09870 [ OMERI02G09870]	2	8362932	8368468	v1.3	Oryza meridionalis (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Omeridionalis_OMERI02G09870.1 OMERI02G09870.1	High	No	213	OG0256180		Get ORF Coding potential... Type: noncoding Potential: -0.782 Folding energies... MFEI: -35.540 AMFE: -0.664 GC content %: 53.521
Omeridionalis_OMERI02G09870.2 OMERI02G09870.2	High	No	671	OG0054141		Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -33.308 AMFE: -0.650 GC content %: 51.267
Omeridionalis_OMERI02G09870.3 OMERI02G09870.3	High	No	728	OG0054141		Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -34.011 AMFE: -0.648 GC content %: 52.473

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).