GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Omeridionalis_OMERI02G11700 [ OMERI02G11700]	2	10432431	10449239	v1.3	Oryza meridionalis (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Omeridionalis_OMERI02G11700.2 OMERI02G11700.2	High	No	312	OG0054143		Get ORF Coding potential... Type: noncoding Potential: -0.567 Folding energies... MFEI: -25.929 AMFE: -0.547 GC content %: 47.436
Omeridionalis_OMERI02G11700.3 OMERI02G11700.3	High	No	228	OG0054143		Get ORF Coding potential... Type: noncoding Potential: -0.782 Folding energies... MFEI: -22.500 AMFE: -0.442 GC content %: 50.877

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).