GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Omeridionalis_OMERI02G11770 [ OMERI02G11770]	2	10555011	10562063	v1.3	Oryza meridionalis (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Omeridionalis_OMERI02G11770.1 OMERI02G11770.1	Low	No	1445	OG0014143		Get ORF Coding potential... Type: coding Potential: 2.008 Folding energies... MFEI: -30.291 AMFE: -0.651 GC content %: 46.505
Omeridionalis_OMERI02G11770.2 OMERI02G11770.2	Low	No	1433	OG0014143		Get ORF Coding potential... Type: coding Potential: 1.967 Folding energies... MFEI: -30.468 AMFE: -0.657 GC content %: 46.406

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).