GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Omeridionalis_OMERI02G11840 [ OMERI02G11840]	2	10658103	10668599	v1.3	Oryza meridionalis (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Omeridionalis_OMERI02G11840.3 OMERI02G11840.3	High	No	237	OG0256204		Get ORF Coding potential... Type: noncoding Potential: -0.560 Folding energies... MFEI: -31.308 AMFE: -0.594 GC content %: 52.743
Omeridionalis_OMERI02G11840.4 OMERI02G11840.4	High	No	201	OG0256205		Get ORF Coding potential... Type: noncoding Potential: -0.714 Folding energies... MFEI: -32.438 AMFE: -0.593 GC content %: 54.726

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).