GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Omeridionalis_OMERI02G15560 [ OMERI02G15560]	2	15846974	15883004	v1.3	Oryza meridionalis (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Omeridionalis_OMERI02G15560.1 OMERI02G15560.1	High	No	665	OG0054149		Get ORF Coding potential... Type: noncoding Potential: -0.553 Folding energies... MFEI: -24.180 AMFE: -0.715 GC content %: 33.835
Omeridionalis_OMERI02G15560.2 OMERI02G15560.2	High	No	581	OG0054149		Get ORF Coding potential... Type: noncoding Potential: -0.754 Folding energies... MFEI: -22.444 AMFE: -0.697 GC content %: 32.186

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).