Omeridionalis OMERI02G26730
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Omeridionalis_OMERI02G26730 [ OMERI02G26730] |
2 | 28650315 | 28656845 | v1.3 | Oryza meridionalis (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Omeridionalis_OMERI02G26730.1 OMERI02G26730.1 |
High | No | 1461 | OG0014148 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -33.368 AMFE: -0.647 GC content %: 51.608 | |
| Omeridionalis_OMERI02G26730.2 OMERI02G26730.2 |
High | No | 483 | OG0014148 | Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -40.497 AMFE: -0.617 GC content %: 65.631 | |
| Omeridionalis_OMERI02G26730.3 OMERI02G26730.3 |
High | No | 570 | OG0014148 | Get ORF Coding potential... Type: noncoding Potential: -0.781 Folding energies... MFEI: -37.386 AMFE: -0.585 GC content %: 63.860 | |
| Omeridionalis_OMERI02G26730.4 OMERI02G26730.4 |
High | No | 853 | OG0014148 | Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -34.338 AMFE: -0.613 GC content %: 56.038 | |
| Omeridionalis_OMERI02G26730.5 OMERI02G26730.5 |
High | No | 502 | OG0014062 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -25.797 AMFE: -0.591 GC content %: 43.625 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
