GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Omeridionalis_OMERI02G35720 [ OMERI02G35720]	2	36784467	36787828	v1.3	Oryza meridionalis (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Omeridionalis_OMERI02G35720.1 OMERI02G35720.1	Low	No	360	OG0256457		Get ORF Coding potential... Type: coding Potential: 0.092 Folding energies... MFEI: -32.306 AMFE: -0.650 GC content %: 49.722
Omeridionalis_OMERI02G35720.2 OMERI02G35720.2	High	No	1160	OG0256458		Get ORF Coding potential... Type: noncoding Potential: -0.287 Folding energies... MFEI: -29.836 AMFE: -0.711 GC content %: 41.983

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).