GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Omeridionalis_OMERI05G09480 [ OMERI05G09480]	5	11844265	11845899	v1.3	Oryza meridionalis (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Omeridionalis_OMERI05G09480.1 OMERI05G09480.1	High	No	1182	OG0001222		Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -26.963 AMFE: -0.630 GC content %: 42.809
Omeridionalis_OMERI05G09480.2 OMERI05G09480.2	High	No	970	OG0001222		Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -25.000 AMFE: -0.654 GC content %: 38.247

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).