Omeridionalis OMERI06G11440
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Omeridionalis_OMERI06G11440 [ OMERI06G11440] |
6 | 10146524 | 10157012 | v1.3 | Oryza meridionalis (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Omeridionalis_OMERI06G11440.1 OMERI06G11440.1 |
Low | No | 391 | OG0000831 | Get ORF Coding potential... Type: noncoding Potential: -0.392 Folding energies... MFEI: -24.731 AMFE: -0.579 GC content %: 42.711 | |
| Omeridionalis_OMERI06G11440.2 OMERI06G11440.2 |
Low | No | 342 | OG0000831 | Get ORF Coding potential... Type: noncoding Potential: -0.366 Folding energies... MFEI: -26.959 AMFE: -0.607 GC content %: 44.444 | |
| Omeridionalis_OMERI06G11440.3 OMERI06G11440.3 |
High | No | 280 | OG0000831 | Get ORF Coding potential... Type: noncoding Potential: -0.854 Folding energies... MFEI: -27.143 AMFE: -0.589 GC content %: 46.071 | |
| Omeridionalis_OMERI06G11440.4 OMERI06G11440.4 |
High | No | 277 | OG0000831 | Get ORF Coding potential... Type: noncoding Potential: -0.664 Folding energies... MFEI: -27.509 AMFE: -0.600 GC content %: 45.848 | |
| Omeridionalis_OMERI06G11440.5 OMERI06G11440.5 |
High | No | 656 | OG0000831 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -23.430 AMFE: -0.657 GC content %: 35.671 | |
| Omeridionalis_OMERI06G11440.6 OMERI06G11440.6 |
Low | No | 253 | OG0257545 | Get ORF Coding potential... Type: noncoding Potential: -0.449 Folding energies... MFEI: -23.202 AMFE: -0.519 GC content %: 44.664 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Omeridionalis_OMERI06G11440.2 | SwissProt | 2021-04-01 | Q8RXN4 | 9.7e-8 |
| Omeridionalis_OMERI06G11440.6 | SwissProt | 2021-04-01 | Q8RXN4 | 5.43e-4 |
| Omeridionalis_OMERI06G11440.1 | SwissProt | 2021-04-01 | Q8RXN4 | 5.2e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
