GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Omeridionalis_OMERI11G06430 [ OMERI11G06430]	11	6427181	6452020	v1.3	Oryza meridionalis (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Omeridionalis_OMERI11G06430.4 OMERI11G06430.4	High	No	347	OG0258671		Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -48.559 AMFE: -0.717 GC content %: 67.723
Omeridionalis_OMERI11G06430.5 OMERI11G06430.5	High	No	479	OG0258672		Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -29.624 AMFE: -0.651 GC content %: 45.511

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).