GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Omeridionalis_OMERI11G09320 [ OMERI11G09320]	11	10915054	10918920	v1.3	Oryza meridionalis (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Omeridionalis_OMERI11G09320.1 OMERI11G09320.1	High	No	2049	OG0054328		Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -27.648 AMFE: -0.591 GC content %: 46.803
Omeridionalis_OMERI11G09320.2 OMERI11G09320.2	High	No	1915	OG0054328		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -27.932 AMFE: -0.591 GC content %: 47.258

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).