Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Onivara_ONIVA01G01840 [ ONIVA01G01840] |
1 | 1261218 | 1265913 | v1 | Oryza nivara (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Onivara_ONIVA01G01840.1 ONIVA01G01840.1 |
High | No | 321 | OG0001772 | Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -31.059 AMFE: -0.608 GC content %: 51.090 | |
Onivara_ONIVA01G01840.2 ONIVA01G01840.2 |
High | No | 348 | OG0001772 | Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -30.345 AMFE: -0.562 GC content %: 54.023 | |
Onivara_ONIVA01G01840.3 ONIVA01G01840.3 |
High | No | 252 | OG0001772 | Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -25.000 AMFE: -0.512 GC content %: 48.810 | |
Onivara_ONIVA01G01840.5 ONIVA01G01840.5 |
High | No | 312 | OG0001772 | Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -29.968 AMFE: -0.567 GC content %: 52.885 | |
Onivara_ONIVA01G01840.6 ONIVA01G01840.6 |
High | No | 354 | OG0001772 | Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -31.864 AMFE: -0.588 GC content %: 54.237 | |
Onivara_ONIVA01G01840.7 ONIVA01G01840.7 |
High | No | 237 | OG0001772 | Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -28.439 AMFE: -0.613 GC content %: 46.414 |