GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Onivara_ONIVA01G02610 [ ONIVA01G02610]	1	1829509	1829843	v1	Oryza nivara (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Onivara_ONIVA01G02610.1 ONIVA01G02610.1	High	No	240	OG0259080		Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -34.292 AMFE: -0.643 GC content %: 53.333
Onivara_ONIVA01G02610.2 ONIVA01G02610.2	High	No	246	OG0259081		Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -33.984 AMFE: -0.638 GC content %: 53.252

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).