Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Onivara_ONIVA09G06800 [ ONIVA09G06800] |
9 | 8918155 | 8923329 | v1 | Oryza nivara (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Onivara_ONIVA09G06800.1 ONIVA09G06800.1 |
Low | No | 455 | OG0014195 | Get ORF Coding potential... Type: noncoding Potential: -0.593 Folding energies... MFEI: -26.879 AMFE: -0.634 GC content %: 42.418 | |
Onivara_ONIVA09G06800.2 ONIVA09G06800.2 |
Low | No | 371 | OG0014195 | Get ORF Coding potential... Type: noncoding Potential: -0.572 Folding energies... MFEI: -24.717 AMFE: -0.592 GC content %: 41.779 | |
Onivara_ONIVA09G06800.3 ONIVA09G06800.3 |
Low | No | 315 | OG0014195 | Get ORF Coding potential... Type: noncoding Potential: -0.568 Folding energies... MFEI: -24.984 AMFE: -0.596 GC content %: 41.905 | |
Onivara_ONIVA09G06800.4 ONIVA09G06800.4 |
Low | No | 285 | OG0014195 | Get ORF Coding potential... Type: noncoding Potential: -0.556 Folding energies... MFEI: -24.386 AMFE: -0.584 GC content %: 41.754 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Onivara_ONIVA09G06800.3 | SwissProt | 2021-04-01 | Q40082 | 1.02e-32 |
Onivara_ONIVA09G06800.4 | SwissProt | 2021-04-01 | Q40082 | 3.9e-33 |
Onivara_ONIVA09G06800.1 | SwissProt | 2021-04-01 | Q40082 | 2.47e-32 |
Onivara_ONIVA09G06800.2 | SwissProt | 2021-04-01 | Q40082 | 7.09e-33 |