Opunctata ENSRNA049478798

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Opunctata_ENSRNA049478798
[ ENSRNA049478798]
12 24405769 24405983 v1.2 Oryza punctata (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Opunctata_ENSRNA049478798-T1
ENSRNA049478798-T1
Low No 215 OG0054952
Coding potential...
Type: coding Potential: 1.320
Folding energies...
MFEI: -28.326 AMFE: -0.530
GC content
%: 53.488


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Opunctata_ENSRNA049478798-T1  RepBase (RepeatMasker) 2014-01-31 rRNA


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Opunctata_ENSRNA049478798.png