Opunctata ENSRNA049486309

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Opunctata_ENSRNA049486309
[ ENSRNA049486309]
2 20700403 20700605 v1.2 Oryza punctata (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Opunctata_ENSRNA049486309-T1
ENSRNA049486309-T1
Low Yes 203 OG0262526
Coding potential...
Type: noncoding Potential: -1.139
Folding energies...
MFEI: -38.374 AMFE: -0.875
GC content
%: 43.842


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Opunctata_ENSRNA049486309-T1  Rfam 14.6 MIR169_2 4.7e-15


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Opunctata_ENSRNA049486309.png