Opunctata OPUNC01G00540

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Opunctata_OPUNC01G00540
[ OPUNC01G00540]
1 406271 406570 v1.2 Oryza punctata (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Opunctata_OPUNC01G00540.1
OPUNC01G00540.1
High No 300 OG0262532
Coding potential...
Type: noncoding Potential: -0.773
Folding energies...
MFEI: -43.367 AMFE: -0.629
GC content
%: 69.000


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Opunctata_OPUNC01G00540.png