GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Opunctata_OPUNC01G01450 [ OPUNC01G01450]	1	1059002	1063051	v1.2	Oryza punctata (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Opunctata_OPUNC01G01450.1 OPUNC01G01450.1	High	No	331	OG0054955		Get ORF Coding potential... Type: noncoding Potential: -0.648 Folding energies... MFEI: -26.888 AMFE: -0.563 GC content %: 47.734
Opunctata_OPUNC01G01450.2 OPUNC01G01450.2	High	No	232	OG0054955		Get ORF Coding potential... Type: noncoding Potential: -0.885 Folding energies... MFEI: -28.060 AMFE: -0.571 GC content %: 49.138

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).