Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Opunctata_OPUNC01G09780 [ OPUNC01G09780] |
1 | 8159747 | 8166396 | v1.2 | Oryza punctata (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Opunctata_OPUNC01G09780.5 OPUNC01G09780.5 |
Low | No | 354 | OG0021058 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -41.525 AMFE: -0.636 GC content %: 65.254 | |
Opunctata_OPUNC01G09780.7 OPUNC01G09780.7 |
Low | No | 312 | OG0021058 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -38.814 AMFE: -0.602 GC content %: 64.423 | |
Opunctata_OPUNC01G09780.8 OPUNC01G09780.8 |
Low | No | 216 | OG0021058 | Get ORF Coding potential... Type: noncoding Potential: -1.493 Folding energies... MFEI: -41.343 AMFE: -0.633 GC content %: 65.278 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Opunctata_OPUNC01G09780.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
Opunctata_OPUNC01G09780.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
Opunctata_OPUNC01G09780.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |