GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Opunctata_OPUNC01G10140 [ OPUNC01G10140]	1	8499590	8502232	v1.2	Oryza punctata (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Opunctata_OPUNC01G10140.1 OPUNC01G10140.1	High	No	239	OG0054957		Get ORF Coding potential... Type: noncoding Potential: -1.220 Folding energies... MFEI: -27.824 AMFE: -0.528 GC content %: 52.720
Opunctata_OPUNC01G10140.2 OPUNC01G10140.2	High	No	276	OG0054957		Get ORF Coding potential... Type: noncoding Potential: -1.236 Folding energies... MFEI: -32.609 AMFE: -0.584 GC content %: 55.797

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).