GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Opunctata_OPUNC01G10780 [ OPUNC01G10780]	1	9012311	9014475	v1.2	Oryza punctata (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Opunctata_OPUNC01G10780.1 OPUNC01G10780.1	Low	No	315	OG0262622		Get ORF Coding potential... Type: coding Potential: 0.140 Folding energies... MFEI: -34.952 AMFE: -0.583 GC content %: 60.000
Opunctata_OPUNC01G10780.2 OPUNC01G10780.2	Low	No	231	OG0262623		Get ORF Coding potential... Type: coding Potential: 0.195 Folding energies... MFEI: -35.628 AMFE: -0.610 GC content %: 58.442

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).