GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Opunctata_OPUNC01G27070 [ OPUNC01G27070]	1	30665256	30669628	v1.2	Oryza punctata (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Opunctata_OPUNC01G27070.1 OPUNC01G27070.1	High	No	279	OG0262799		Get ORF Coding potential... Type: noncoding Potential: -0.702 Folding energies... MFEI: -31.900 AMFE: -0.571 GC content %: 55.914
Opunctata_OPUNC01G27070.2 OPUNC01G27070.2	High	No	221	OG0262800		Get ORF Coding potential... Type: noncoding Potential: -0.790 Folding energies... MFEI: -34.751 AMFE: -0.582 GC content %: 59.729

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).