GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Opunctata_OPUNC01G32830 [ OPUNC01G32830]	1	36040243	36043526	v1.2	Oryza punctata (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Opunctata_OPUNC01G32830.1 OPUNC01G32830.1	High	No	306	OG0006338		Get ORF Coding potential... Type: noncoding Potential: -1.400 Folding energies... MFEI: -27.712 AMFE: -0.474 GC content %: 58.497
Opunctata_OPUNC01G32830.2 OPUNC01G32830.2	High	No	339	OG0006338		Get ORF Coding potential... Type: noncoding Potential: -1.406 Folding energies... MFEI: -28.820 AMFE: -0.491 GC content %: 58.702
Opunctata_OPUNC01G32830.3 OPUNC01G32830.3	High	No	237	OG0262850		Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -35.865 AMFE: -0.567 GC content %: 63.291

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).