GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Opunctata_OPUNC01G34810 [ OPUNC01G34810]	1	37993240	37995377	v1.2	Oryza punctata (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Opunctata_OPUNC01G34810.1 OPUNC01G34810.1	High	No	327	OG0054972		Get ORF Coding potential... Type: noncoding Potential: -0.427 Folding energies... MFEI: -30.061 AMFE: -0.585 GC content %: 51.376
Opunctata_OPUNC01G34810.2 OPUNC01G34810.2	High	No	225	OG0054972		Get ORF Coding potential... Type: noncoding Potential: -0.547 Folding energies... MFEI: -26.711 AMFE: -0.527 GC content %: 50.667
Opunctata_OPUNC01G34810.3 OPUNC01G34810.3	High	No	324	OG0262866		Get ORF Coding potential... Type: noncoding Potential: -0.328 Folding energies... MFEI: -29.907 AMFE: -0.584 GC content %: 51.235

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).