GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Opunctata_OPUNC01G37620 [ OPUNC01G37620]	1	40674365	40676333	v1.2	Oryza punctata (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Opunctata_OPUNC01G37620.2 OPUNC01G37620.2	High	No	249	OG0262888		Get ORF Coding potential... Type: noncoding Potential: -0.499 Folding energies... MFEI: -28.554 AMFE: -0.588 GC content %: 48.594
Opunctata_OPUNC01G37620.3 OPUNC01G37620.3	High	No	299	OG0262889		Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -36.589 AMFE: -0.629 GC content %: 58.194

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).