GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Opunctata_OPUNC01G37900 [ OPUNC01G37900]	1	40928011	40932970	v1.2	Oryza punctata (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Opunctata_OPUNC01G37900.1 OPUNC01G37900.1	High	No	249	OG0262891		Get ORF Coding potential... Type: noncoding Potential: -0.529 Folding energies... MFEI: -35.863 AMFE: -0.692 GC content %: 51.807
Opunctata_OPUNC01G37900.2 OPUNC01G37900.2	High	No	219	OG0262892		Get ORF Coding potential... Type: noncoding Potential: -0.751 Folding energies... MFEI: -31.416 AMFE: -0.578 GC content %: 54.338

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).