GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Opunctata_OPUNC01G39060 [ OPUNC01G39060]	1	41883297	41888991	v1.2	Oryza punctata (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Opunctata_OPUNC01G39060.2 OPUNC01G39060.2	Low	No	213	OG0262899		Get ORF Coding potential... Type: coding Potential: 0.327 Folding energies... MFEI: -33.803 AMFE: -0.537 GC content %: 62.911
Opunctata_OPUNC01G39060.3 OPUNC01G39060.3	Low	No	276	OG0262900		Get ORF Coding potential... Type: coding Potential: 0.606 Folding energies... MFEI: -39.130 AMFE: -0.617 GC content %: 63.406

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).