GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Opunctata_OPUNC01G39560 [ OPUNC01G39560]	1	42198783	42207682	v1.2	Oryza punctata (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Opunctata_OPUNC01G39560.1 OPUNC01G39560.1	High	No	1297	OG0009019		Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -30.270 AMFE: -0.671 GC content %: 45.104
Opunctata_OPUNC01G39560.2 OPUNC01G39560.2	High	No	1140	OG0009019		Get ORF Coding potential... Type: noncoding Potential: -1.355 Folding energies... MFEI: -33.474 AMFE: -0.684 GC content %: 48.947
Opunctata_OPUNC01G39560.3 OPUNC01G39560.3	Low	No	3571	OG0009019		Get ORF Coding potential... Type: coding Potential: 1.608 Folding energies... MFEI: -30.961 AMFE: -0.641 GC content %: 48.278

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).