GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Opunctata_OPUNC02G09870 [ OPUNC02G09870]	2	8688431	8706008	v1.2	Oryza punctata (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Opunctata_OPUNC02G09870.1 OPUNC02G09870.1	High	No	354	OG0263060		Get ORF Coding potential... Type: noncoding Potential: -0.791 Folding energies... MFEI: -29.661 AMFE: -0.600 GC content %: 49.435
Opunctata_OPUNC02G09870.3 OPUNC02G09870.3	High	No	312	OG0263061		Get ORF Coding potential... Type: noncoding Potential: -0.523 Folding energies... MFEI: -23.974 AMFE: -0.527 GC content %: 45.513

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).