GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Opunctata_OPUNC02G33550 [ OPUNC02G33550]	2	38009581	38013872	v1.2	Oryza punctata (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Opunctata_OPUNC02G33550.1 OPUNC02G33550.1	High	No	1653	OG0021062		Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -29.044 AMFE: -0.653 GC content %: 44.465
Opunctata_OPUNC02G33550.2 OPUNC02G33550.2	High	No	324	OG0263298		Get ORF Coding potential... Type: noncoding Potential: -0.488 Folding energies... MFEI: -36.852 AMFE: -0.642 GC content %: 57.407
Opunctata_OPUNC02G33550.3 OPUNC02G33550.3	High	No	1582	OG0021062		Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -29.140 AMFE: -0.666 GC content %: 43.742
Opunctata_OPUNC02G33550.4 OPUNC02G33550.4	High	No	252	OG0263299		Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -46.548 AMFE: -0.742 GC content %: 62.698
Opunctata_OPUNC02G33550.5 OPUNC02G33550.5	High	No	1389	OG0021062		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -28.315 AMFE: -0.688 GC content %: 41.181

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).