Opunctata OPUNC08G14800

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Opunctata_OPUNC08G14800
[ OPUNC08G14800]
8 22214255 22216438 v1.2 Oryza punctata (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Opunctata_OPUNC08G14800.1
OPUNC08G14800.1
Low No 1366 OG0055070
Coding potential...
Type: noncoding Potential: -1.040
Folding energies...
MFEI: -31.398 AMFE: -0.633
GC content
%: 49.634
Opunctata_OPUNC08G14800.2
OPUNC08G14800.2
Low No 1291 OG0055070
Coding potential...
Type: noncoding Potential: -1.031
Folding energies...
MFEI: -30.503 AMFE: -0.632
GC content
%: 48.257


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Opunctata_OPUNC08G14800.1  SwissProt 2021-04-01 Q8LD26 5.44e-6
Opunctata_OPUNC08G14800.2  SwissProt 2021-04-01 Q8LD26 1.79e-7


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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