GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Opunctata_OPUNC12G10670 [ OPUNC12G10670]	12	18362439	18363549	v1.2	Oryza punctata (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Opunctata_OPUNC12G10670.1 OPUNC12G10670.1	High	No	428	OG0265851		Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -39.276 AMFE: -0.634 GC content %: 61.916
Opunctata_OPUNC12G10670.2 OPUNC12G10670.2	High	No	353	OG0265852		Get ORF Coding potential... Type: noncoding Potential: -0.771 Folding energies... MFEI: -27.195 AMFE: -0.471 GC content %: 57.790

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).