GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Orufipogon_ORUFI03G12510 [ ORUFI03G12510]	3	8619993	8629936	w1943	Oryza rufipogon (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Orufipogon_ORUFI03G12510.1 ORUFI03G12510.1	High	No	897	OG0054502		Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -29.443 AMFE: -0.630 GC content %: 46.711
Orufipogon_ORUFI03G12510.2 ORUFI03G12510.2	High	No	1045	OG0014181		Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -29.407 AMFE: -0.625 GC content %: 47.081
Orufipogon_ORUFI03G12510.3 ORUFI03G12510.3	High	No	732	OG0014181		Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -29.358 AMFE: -0.621 GC content %: 47.268

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).