GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Orufipogon_ORUFI04G18270 [ ORUFI04G18270]	4	20295702	20303473	w1943	Oryza rufipogon (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Orufipogon_ORUFI04G18270.2 ORUFI04G18270.2	High	No	282	OG0006318		Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -27.021 AMFE: -0.537 GC content %: 50.355
Orufipogon_ORUFI04G18270.3 ORUFI04G18270.3	High	No	1293	OG0006318		Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -29.165 AMFE: -0.627 GC content %: 46.481

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).