Orufipogon ORUFI06G01580
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Orufipogon_ORUFI06G01580 [ ORUFI06G01580] |
6 | 1256180 | 1261273 | w1943 | Oryza rufipogon (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Orufipogon_ORUFI06G01580.1 ORUFI06G01580.1 |
High | No | 315 | OG0055289 | Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -34.762 AMFE: -0.539 GC content %: 64.444 | |
| Orufipogon_ORUFI06G01580.2 ORUFI06G01580.2 |
High | No | 213 | OG0054655 | Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -22.911 AMFE: -0.452 GC content %: 50.704 | |
| Orufipogon_ORUFI06G01580.3 ORUFI06G01580.3 |
High | No | 222 | OG0267603 | Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -38.198 AMFE: -0.577 GC content %: 66.216 | |
| Orufipogon_ORUFI06G01580.4 ORUFI06G01580.4 |
High | No | 246 | OG0055289 | Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -24.228 AMFE: -0.448 GC content %: 54.065 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
