GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Orufipogon_ORUFI07G11050 [ ORUFI07G11050]	7	10289550	10292872	w1943	Oryza rufipogon (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Orufipogon_ORUFI07G11050.1 ORUFI07G11050.1	High	No	1336	OG0021094		Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -26.175 AMFE: -0.552 GC content %: 47.455
Orufipogon_ORUFI07G11050.2 ORUFI07G11050.2	High	No	1314	OG0021094		Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -26.469 AMFE: -0.561 GC content %: 47.184
Orufipogon_ORUFI07G11050.3 ORUFI07G11050.3	High	No	1414	OG0021094		Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -26.754 AMFE: -0.544 GC content %: 49.151

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).