GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Orufipogon_ORUFI07G11430 [ ORUFI07G11430]	7	11070467	11072121	w1943	Oryza rufipogon (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Orufipogon_ORUFI07G11430.2 ORUFI07G11430.2	High	No	534	OG0000424		Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -30.637 AMFE: -0.531 GC content %: 57.678
Orufipogon_ORUFI07G11430.3 ORUFI07G11430.3	High	No	588	OG0000424		Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -29.745 AMFE: -0.538 GC content %: 55.272
Orufipogon_ORUFI07G11430.4 ORUFI07G11430.4	High	No	437	OG0000424		Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -31.922 AMFE: -0.534 GC content %: 59.725

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).