GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Orufipogon_ORUFI10G02420 [ ORUFI10G02420]	10	2730664	2732223	w1943	Oryza rufipogon (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Orufipogon_ORUFI10G02420.1 ORUFI10G02420.1	High	No	1343	OG0020822		Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -30.208 AMFE: -0.623 GC content %: 48.474
Orufipogon_ORUFI10G02420.2 ORUFI10G02420.2	High	No	1383	OG0020822		Get ORF Coding potential... Type: noncoding Potential: -1.570 Folding energies... MFEI: -30.094 AMFE: -0.627 GC content %: 48.012

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).