Osativa ChrUn.fgenesh.gene.1

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Osativa_ChrUn.fgenesh.gene.1
[ ChrUn.fgenesh.gene.1]
ChrUn 1193 1644 v7 Oryza sativa (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Osativa_ChrUn.fgenesh.mRNA.1
ChrUn.fgenesh.mRNA.1
High No 321 OG0269362
Coding potential...
Type: noncoding Potential: -0.640
Folding energies...
MFEI: -45.888 AMFE: -0.698
GC content
%: 65.732


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Osativa_ChrUn.fgenesh.gene.1.png