GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Osativa_LOC_Os02g06760 [ LOC_Os02g06760]	Chr2	3411220	3415305	v7	Oryza sativa (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Osativa_LOC_Os02g06760.1 LOC_Os02g06760.1	High	No	648	OG0004223		Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -32.238 AMFE: -0.629 GC content %: 51.235
Osativa_LOC_Os02g06760.2 LOC_Os02g06760.2	High	No	580	OG0004223		Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -33.897 AMFE: -0.638 GC content %: 53.103
Osativa_LOC_Os02g06760.3 LOC_Os02g06760.3	High	No	552	OG0004223		Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -34.257 AMFE: -0.645 GC content %: 53.080

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).