GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Osativa_LOC_Os08g31769 [ LOC_Os08g31769]	Chr8	19693446	19698103	v7	Oryza sativa (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Osativa_LOC_Os08g31769.1 LOC_Os08g31769.1	High	No	651	OG0055541		Get ORF Coding potential... Type: noncoding Potential: -0.210 Folding energies... MFEI: -36.774 AMFE: -0.669 GC content %: 54.992
Osativa_LOC_Os08g31769.2 LOC_Os08g31769.2	High	No	653	OG0055541		Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -35.161 AMFE: -0.652 GC content %: 53.905

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).