Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Osativa_LOC_Os09g08710 [ LOC_Os09g08710] |
Chr9 | 4577706 | 4580686 | v7 | Oryza sativa (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Osativa_LOC_Os09g08710.1 LOC_Os09g08710.1 |
Low | No | 638 | OG0009029 | Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -29.373 AMFE: -0.612 GC content %: 47.962 | |
Osativa_LOC_Os09g08710.2 LOC_Os09g08710.2 |
Low | Yes | 909 | OG0009029 | Get ORF Coding potential... Type: noncoding Potential: -1.223 Folding energies... MFEI: -38.339 AMFE: -0.728 GC content %: 52.695 | |
Osativa_LOC_Os09g08710.3 LOC_Os09g08710.3 |
Low | Yes | 991 | OG0009029 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -38.113 AMFE: -0.731 GC content %: 52.170 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Osativa_LOC_Os09g08710.2 | Rfam | 14.6 | MIR1846 | 0.0056 |
Osativa_LOC_Os09g08710.3 | Rfam | 14.6 | MIR1846 | 0.0062 |
Osativa_LOC_Os09g08710.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Osativa_LOC_Os09g08710.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Osativa_LOC_Os09g08710.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |